NIAB - National Institute of Agricultural Botany

Assay information: HvPPDH1_T3081G

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Narrative

The PPD-H1 long-day photoperiod response locus is encoded by a PSEUDORESPONSE REGULATOR (PMID: 16284181). Dominant wild-type Ppd-H1 alleles confer floral promotion under long-day photoperiods, while recessive ppd-H1 alleles do not confer such induction under long-days. While the causative mutation within the underlying gene has not been formally identified, it is thought to be a non-synonymous SNP within the CCT domain of exon 8 (KASPar assay HvPPDH1_T3081G). SNP G = predictive of the long-day photoperiod responsive allele, SNP T = predictive of the long-day photoperiod non-responsive.

References

PMID: 21115826; 16284181

Map AGOUEB ver1
Chromosome 2H
cM position 27.30
Assay ID 9720106
Assay Name HvPPDH1_T3081G
Reference Allele Sequences
Sequence ID Allele Phenotype
gi|65329049|gb|AY970701 G long-day photoperiod responsive (cv Igri, allele Ppd-H1)
gi|628688022|gb|AY943294 T long-day photoperiod non-responsive (cv Morex, allele ppd-H1)
Polymorphism sequence CGCCCACGGGTGCGC[T/G]GGCAGTTCGTGCGGC
Reference allele sequence alignment
Jalview displaying file: PPD.aln
Validation plot
Genotype data
Accession Name Other Ref Genotype call (with filter) Reference sample of known genotype
Maris_Otter AFP 2/232 T
Golden_Promise AFP 2/235 T
Triumph AFP 2/278 T
Golf AFP 2/421 T
Klaxon AFP 2/456 T
Halycon AFP 2/514 T
Pipkin AFP 2/578 T
Dandy AFP 2/674 T
Blenheim AFP 2/688 T
Tyne AFP 2/750 T
Puffin AFP 2/806 G
Pastoral AFP 2/816 G
Posaune AFP 2/820 G
Gypsy AFP 2/884 T
Clarine AFP 2/899 G
Alexis AFP 2/904 T
Fighter AFP 2/947 T
Manitou AFP 2/951 G
Sprite AFP 2/954 G
Bronze AFP 2/994 G
Blanche AFP 2/1002 T
Derkado AFP 2/1011 T
Dallas AFP 2/1022 T
Graphic AFP 2/1029 T
Chariot AFP 2/1031 T
Willow AFP 2/1055 G
Swift AFP 2/1058 T
Intro AFP 2/1071 G
Felicie AFP 2/1091 T
Linnet AFP 2/1127 T
Delibes AFP 2/1133 T
Cooper AFP 2/1146 T
Brewster AFP 2/1147 T
Melanie AFP 2/1160 T
Sunrise AFP 2/1162 G
Rhythm AFP 2/1169 G
Tempo AFP 2/1170 G
Fanfare AFP 2/1171 G
Vivaldi AFP 2/1173 G
Emeraude AFP 2/1183 G
Hanna AFP 2/1184 G
Cork AFP 2/1187 T
Optic AFP 2/1188 T
Brahms AFP 2/1191 T
Canasta AFP 2/1194 T
Reggae AFP 2/1196 T
Riviera AFP 2/1203 T
Tokyo AFP 2/1210 T
Arctic AFP 2/1211 G
Muscat AFP 2/1214 G
Mystique AFP 2/1219 G
Prelude AFP 2/1221 T
Crown AFP 2/1230 G
Tankard AFP 2/1238 T
Wren AFP 2/1242 T
Ragtime AFP 2/1244 T
Clarity AFP 2/1246 U
Trinidad AFP 2/1256 T
Volley AFP 2/1262 G
Rifle AFP 2/1263 T
Cobalt AFP 2/1264 G
Tiffany AFP 2/1266 T
Antigua AFP 2/1276 G
Emilia AFP 2/1281 G
Spice AFP 2/1285 T
Quartet AFP 2/1291 T
Landlord AFP 2/1293 T
Rainbow AFP 2/1301 T
Charm AFP 2/1303 T
Torup AFP 2/1311 G
Pearl AFP 2/1318 T
Jewel AFP 2/1320 G
Baton AFP 2/1326 G
Spirit AFP 2/1334 T
Candy AFP 2/1345 G
Ricarda AFP 2/1350 T
Bistro AFP 2/1392 G
Angela AFP 2/1397 G
Heligan AFP 2/1402 G
Tabetha AFP 2/1404 G
Acorn AFP 2/1409 T
Century AFP 2/1410 T
Decanter AFP 2/1411 T
Linden AFP 2/1415 T
Acapella AFP 2/1419 T
Horizon AFP 2/1423 T
Static AFP 2/1427 T
Pongo AFP 2/1431 T
Opal AFP 2/1435 T
Wizard AFP 2/1442 G
Steeple AFP 2/1443 G
Arrow AFP 2/1445 T
Rounder AFP 2/1457 G
Siberia AFP 2/1463 G
Halifax AFP 2/1466 G
Artist AFP 2/1468 G
Leonie AFP 2/1471 T
Berwick AFP 2/1474 T
Otira AFP 2/1485 T
Potter AFP 2/1492 T
Saloon AFP 2/1501 T
Anvil AFP 2/1511 T
Haka AFP 2/1528 G
Sarah AFP 2/1534 T
Carola AFP 2/1535 T
Violet AFP 2/1540 G
Akita AFP 2/1555 T
Prestige AFP 2/1566 U
Prot AFP 2/1567 T
County AFP 2/1572 T
Pewter AFP 2/1575 T
Brise AFP 2/1576 T
Viskosa AFP 2/1579 T
Neruda AFP 2/1580 T
Agenda AFP 2/1589 T
Azure AFP 2/1591 T
Alabama AFP 2/1597 T
Pippa AFP 2/1599 T
Diamond AFP 2/1604 G
Carat AFP 2/1606 G
Tucker AFP 2/1608 G
Pict AFP 2/1626 G
Scylla AFP 2/1628 T
Spire AFP 2/1668 T
Spike AFP 2/1669 T
Sunbeam AFP 2/1697 T
Cannock AFP 2/1700 T
Kestrel AFP 2/1705 T
Sequel AFP 2/1717 G
Outlook AFP 2/1726 G
Mead AFP 2/1728 G
Rakaia AFP 2/1741 T
Pelican AFP 2/1745 T
Catalina AFP 2/1746 T
Cocktail AFP 2/1769 T
Brazil AFP 2/1780 T
Camion AFP 2/1825 G
Mandolin AFP 2/1841 T
Carafe AFP 2/1862 T
Toby AFP 2/1864 T
Doyen AFP 2/1865 T
Drum AFP 2/1867 T
Rebecca AFP 2/1871 T
Saffron AFP 2/1880 G
Amarena AFP 2/1886 T
Faraday AFP 2/1892 G
Balasun AFP 2/1902 T
Thalia AFP 2/1919 G
Concept AFP 2/1923 T
Westminster AFP 2/1939 T
Oxford AFP 2/1940 T
SW Macsena AFP 2/1951 T
Waggon AFP 2/1963 T
NFC Tipple AFP 2/1966 T
Timori AFP 2/1974 T
Colibri AFP 2/2003 G
Corsica AFP 2/2025 T
Rummy AFP 2/2034 T
Silicon AFP 2/2040 T
Tuscon AFP 2/2050 T
Centurion AFP 2/2054 T
Paramount AFP 2/2055 T
Accent AFP 2/2073 T
Pelican AFP 2/2077 G
Acrobat AFP 2/2102 T
Calico AFP 2/2104 T
Quench AFP 2/2121 T
Azalea AFP 2/2180 U
Tamise AFP 2/2188 T