NIAB - National Institute of Agricultural Botany

Assay information: Hv11_20850_AG

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Narrative

This marker is predictive for allelic state at the SRH locus controlling rachilla hair presence/absence: although it is genetically linked SRH, it does not represent a 'perfect' marker. SNP G = associated with short hairs (DUS score 1), SNP A = associated with long hairs (DUS score 9). Note: this markler represents BOPA1 marker 11_20850. Note: this marker was developed from HarvEST U32 Unigene 5004.

References

PMID: 21115826

Map AGOUEB ver1
Chromosome 5H
cM position 102.06
Assay ID 9720082
Assay Name Hv11_20850_AG
Reference Allele Sequences
Polymorphism sequence GAGGACGTGAATCTG[A/G]AGCATGTGGCGGATG
Reference allele sequence alignment
Validation plot
Genotype data
Accession Name Other Ref Genotype call (with filter) Reference sample of known genotype
Maris_Otter AFP 2/232 A
Golden_Promise AFP 2/235 A
Triumph AFP 2/278 G
Golf AFP 2/421 A
Klaxon AFP 2/456 A
Halycon AFP 2/514 A
Pipkin AFP 2/578 G
Dandy AFP 2/674 G
Blenheim AFP 2/688 G
Tyne AFP 2/750 A
Puffin AFP 2/806 G
Pastoral AFP 2/816 A
Posaune AFP 2/820 A
Gypsy AFP 2/884 A
Clarine AFP 2/899 A
Alexis AFP 2/904 G
Fighter AFP 2/947 A
Manitou AFP 2/951 G
Sprite AFP 2/954 A
Bronze AFP 2/994 A
Blanche AFP 2/1002 A
Derkado AFP 2/1011 G
Dallas AFP 2/1022 A
Graphic AFP 2/1029 A
Chariot AFP 2/1031 G
Willow AFP 2/1055 G
Swift AFP 2/1058 A
Intro AFP 2/1071 A
Felicie AFP 2/1091 G
Linnet AFP 2/1127 A
Delibes AFP 2/1133 A
Cooper AFP 2/1146 A
Brewster AFP 2/1147 A
Melanie AFP 2/1160 G
Sunrise AFP 2/1162 A
Rhythm AFP 2/1169 G
Tempo AFP 2/1170 A
Fanfare AFP 2/1171 A
Vivaldi AFP 2/1173 G
Emeraude AFP 2/1183 G
Hanna AFP 2/1184 A
Cork AFP 2/1187 A
Optic AFP 2/1188 A
Brahms AFP 2/1191 A
Canasta AFP 2/1194 G
Reggae AFP 2/1196 A
Riviera AFP 2/1203 A
Tokyo AFP 2/1210 A
Arctic AFP 2/1211 A
Muscat AFP 2/1214 G
Mystique AFP 2/1219 G
Prelude AFP 2/1221 G
Crown AFP 2/1230 G
Tankard AFP 2/1238 A
Wren AFP 2/1242 G
Ragtime AFP 2/1244 A
Clarity AFP 2/1246 A
Trinidad AFP 2/1256 G
Volley AFP 2/1262 A
Rifle AFP 2/1263 G
Cobalt AFP 2/1264 G
Tiffany AFP 2/1266 G
Antigua AFP 2/1276 A
Emilia AFP 2/1281 A
Spice AFP 2/1285 A
Quartet AFP 2/1291 G
Landlord AFP 2/1293 G
Rainbow AFP 2/1301 G
Charm AFP 2/1303 U
Torup AFP 2/1311 A
Pearl AFP 2/1318 G
Jewel AFP 2/1320 A
Baton AFP 2/1326 A
Spirit AFP 2/1334 A
Candy AFP 2/1345 A
Ricarda AFP 2/1350 G
Bistro AFP 2/1392 A
Angela AFP 2/1397 G
Heligan AFP 2/1402 A
Tabetha AFP 2/1404 A
Acorn AFP 2/1409 G
Century AFP 2/1410 G
Decanter AFP 2/1411 G
Linden AFP 2/1415 A
Acapella AFP 2/1419 A
Horizon AFP 2/1423 G
Static AFP 2/1427 G
Pongo AFP 2/1431 A
Opal AFP 2/1435 G
Wizard AFP 2/1442 G
Steeple AFP 2/1443 G
Arrow AFP 2/1445 A
Rounder AFP 2/1457 A
Siberia AFP 2/1463 G
Halifax AFP 2/1466 A
Artist AFP 2/1468 A
Leonie AFP 2/1471 G
Berwick AFP 2/1474 A
Otira AFP 2/1485 G
Potter AFP 2/1492 G
Saloon AFP 2/1501 A
Anvil AFP 2/1511 A
Haka AFP 2/1528 A
Sarah AFP 2/1534 G
Carola AFP 2/1535 G
Violet AFP 2/1540 A
Akita AFP 2/1555 A
Prestige AFP 2/1566 A
Prot AFP 2/1567 A
County AFP 2/1572 A
Pewter AFP 2/1575 A
Brise AFP 2/1576 A
Viskosa AFP 2/1579 G
Neruda AFP 2/1580 G
Agenda AFP 2/1589 A
Azure AFP 2/1591 G
Alabama AFP 2/1597 A
Pippa AFP 2/1599 G
Diamond AFP 2/1604 A
Carat AFP 2/1606 A
Tucker AFP 2/1608 A
Pict AFP 2/1626 G
Scylla AFP 2/1628 G
Spire AFP 2/1668 A
Spike AFP 2/1669 A
Sunbeam AFP 2/1697 A
Cannock AFP 2/1700 G
Kestrel AFP 2/1705 G
Sequel AFP 2/1717 A
Outlook AFP 2/1726 A
Mead AFP 2/1728 A
Rakaia AFP 2/1741 A
Pelican AFP 2/1745 A
Catalina AFP 2/1746 G
Cocktail AFP 2/1769 A
Brazil AFP 2/1780 A
Camion AFP 2/1825 A
Mandolin AFP 2/1841 A
Carafe AFP 2/1862 G
Toby AFP 2/1864 G
Doyen AFP 2/1865 A
Drum AFP 2/1867 G
Rebecca AFP 2/1871 G
Saffron AFP 2/1880 A
Amarena AFP 2/1886 G
Faraday AFP 2/1892 G
Balasun AFP 2/1902 A
Thalia AFP 2/1919 G
Concept AFP 2/1923 G
Westminster AFP 2/1939 G
Oxford AFP 2/1940 A
SW Macsena AFP 2/1951 G
Waggon AFP 2/1963 G
NFC Tipple AFP 2/1966 G
Timori AFP 2/1974 A
Colibri AFP 2/2003 G
Corsica AFP 2/2025 A
Rummy AFP 2/2034 A
Silicon AFP 2/2040 A
Tuscon AFP 2/2050 G
Centurion AFP 2/2054 A
Paramount AFP 2/2055 A
Accent AFP 2/2073 A
Pelican AFP 2/2077 G
Acrobat AFP 2/2102 A
Calico AFP 2/2104 A
Quench AFP 2/2121 G
Azalea AFP 2/2180 A
Tamise AFP 2/2188 A