"assay_name","narrative","polymorphism","refs","assay_id","chromosome","cm_position","map", "HvVRNH1_SNP2","

Numerous dominant spring or recessive winter alleles at the vernalization locus VRN-H1 have been previously described. Within the European context, these were systematically investigated (PMID 17713756), identifying seven spring and two winter alleles. Spring Vrn-H1 alleles are differentiated from winter alleles, predominantly due to the presence of deletions within intron 1. Combined haplotypes from KASPar markers HvVRNH1_SNP2 and HvVRNH1_0P5_InDel can be used to identify all but one of the known VRN-H1 alleles (allele 1B, PMID 17713756, see reference allele sequence table below for haplotype combinations from these two KASPar markers. Note: allele 1B is relatively rare in European barley).

","AAAACTGTGCATCTA[A/G]CAGTATATTTTTTTT","

PMID: 21115826; 17713756

","9720117","5H","134.60","AGOUEB ver1", "sequence_id","allele","phenotype", "gi|156616792|gb|EF591644","A/Del","winter (cv Panda, haplotype 1A)", "gi|156616792|gb|EF591649","A/Del","spring (cv Etu, haplotype 1B)", "gi|156616792|gb|EF591650","G/Del","spring (cv Varunda, haplotype 2)", "gi|156616792|gb|EF591636","G/Del","spring (cv Dandy, haplotype 3)", "gi|156616792|gb|EF591639","G/Del","spring (cv Optic, haplotype 4A)", "gi|156616792|gb|EF591641","G/Del","spring (cv Prisma, haplotype 4B)", "gi|156616792|gb|EF591637","G/Del","spring (cv Golden Promise, haplotype 5A)", "gi|156616792|gb|EF591646","G/Del","spring (cv Oriol, haplotype 5B)", "gi|156616792|gb|EF591647","G/Ins","winter (cv Express, haplotype 5C)", "accession_name","other_ref","genotype_call","genotype_ref_sample", "Maris_Otter","AFP 2/232","A","No", "Golden_Promise","AFP 2/235","G","No", "Triumph","AFP 2/278","G","No", "Golf","AFP 2/421","G","No", "Klaxon","AFP 2/456","G","No", "Halycon","AFP 2/514","A","No", "Pipkin","AFP 2/578","A","No", "Dandy","AFP 2/674","G","No", "Blenheim","AFP 2/688","G","No", "Tyne","AFP 2/750","G","No", "Puffin","AFP 2/806","A","No", "Pastoral","AFP 2/816","A","No", "Posaune","AFP 2/820","A","No", "Gypsy","AFP 2/884","A","No", "Clarine","AFP 2/899","A","No", "Alexis","AFP 2/904","G","No", "Fighter","AFP 2/947","G","No", "Manitou","AFP 2/951","A","No", "Sprite","AFP 2/954","A","No", "Bronze","AFP 2/994","A","No", "Blanche","AFP 2/1002","G","No", "Derkado","AFP 2/1011","G","No", "Dallas","AFP 2/1022","G","No", "Graphic","AFP 2/1029","G","No", "Chariot","AFP 2/1031","G","No", "Willow","AFP 2/1055","A","No", "Swift","AFP 2/1058","G","No", "Intro","AFP 2/1071","A","No", "Felicie","AFP 2/1091","G","No", "Linnet","AFP 2/1127","A","No", "Delibes","AFP 2/1133","G","No", "Cooper","AFP 2/1146","G","No", "Brewster","AFP 2/1147","G","No", "Melanie","AFP 2/1160","A","No", "Sunrise","AFP 2/1162","A","No", "Rhythm","AFP 2/1169","A","No", "Tempo","AFP 2/1170","A","No", "Fanfare","AFP 2/1171","A","No", "Vivaldi","AFP 2/1173","A","No", "Emeraude","AFP 2/1183","A","No", "Hanna","AFP 2/1184","A","No", "Cork","AFP 2/1187","G","No", "Optic","AFP 2/1188","G","No", "Brahms","AFP 2/1191","G","No", "Canasta","AFP 2/1194","G","No", "Reggae","AFP 2/1196","G","No", "Riviera","AFP 2/1203","G","No", "Tokyo","AFP 2/1210","G","No", "Arctic","AFP 2/1211","G","No", "Muscat","AFP 2/1214","A","No", "Mystique","AFP 2/1219","A","No", "Prelude","AFP 2/1221","A","No", "Crown","AFP 2/1230","G","No", "Tankard","AFP 2/1238","G","No", "Wren","AFP 2/1242","G","No", "Ragtime","AFP 2/1244","G","No", "Clarity","AFP 2/1246","G","No", "Trinidad","AFP 2/1256","G","No", "Volley","AFP 2/1262","A","No", "Rifle","AFP 2/1263","A","No", "Cobalt","AFP 2/1264","A","No", "Tiffany","AFP 2/1266","A","No", "Antigua","AFP 2/1276","A","No", "Emilia","AFP 2/1281","G","No", "Spice","AFP 2/1285","A","No", "Quartet","AFP 2/1291","G","No", "Landlord","AFP 2/1293","G","No", "Rainbow","AFP 2/1301","G","No", "Charm","AFP 2/1303","G","No", "Torup","AFP 2/1311","A","No", "Pearl","AFP 2/1318","A","No", "Jewel","AFP 2/1320","A","No", "Baton","AFP 2/1326","A","No", "Spirit","AFP 2/1334","A","No", "Candy","AFP 2/1345","G","No", "Ricarda","AFP 2/1350","G","No", "Bistro","AFP 2/1392","A","No", "Angela","AFP 2/1397","G","No", "Heligan","AFP 2/1402","A","No", "Tabetha","AFP 2/1404","U","No", "Acorn","AFP 2/1409","G","No", "Century","AFP 2/1410","G","No", "Decanter","AFP 2/1411","G","No", "Linden","AFP 2/1415","G","No", "Acapella","AFP 2/1419","G","No", "Horizon","AFP 2/1423","G","No", "Static","AFP 2/1427","G","No", "Pongo","AFP 2/1431","G","No", "Opal","AFP 2/1435","A","No", "Wizard","AFP 2/1442","A","No", "Steeple","AFP 2/1443","A","No", "Arrow","AFP 2/1445","A","No", "Rounder","AFP 2/1457","A","No", "Siberia","AFP 2/1463","G","No", "Halifax","AFP 2/1466","A","No", "Artist","AFP 2/1468","A","No", "Leonie","AFP 2/1471","A","No", "Berwick","AFP 2/1474","G","No", "Otira","AFP 2/1485","G","No", "Potter","AFP 2/1492","G","No", "Saloon","AFP 2/1501","G","No", "Anvil","AFP 2/1511","A","No", "Haka","AFP 2/1528","A","No", "Sarah","AFP 2/1534","A","No", "Carola","AFP 2/1535","A","No", "Violet","AFP 2/1540","G","No", "Akita","AFP 2/1555","G","No", "Prestige","AFP 2/1566","G","No", "Prot","AFP 2/1567","G","No", "County","AFP 2/1572","G","No", "Pewter","AFP 2/1575","G","No", "Brise","AFP 2/1576","G","No", "Viskosa","AFP 2/1579","G","No", "Neruda","AFP 2/1580","G","No", "Agenda","AFP 2/1589","G","No", "Azure","AFP 2/1591","G","No", "Alabama","AFP 2/1597","G","No", "Pippa","AFP 2/1599","A","No", "Diamond","AFP 2/1604","A","No", "Carat","AFP 2/1606","A","No", "Tucker","AFP 2/1608","A","No", "Pict","AFP 2/1626","A","No", "Scylla","AFP 2/1628","A","No", "Spire","AFP 2/1668","G","No", "Spike","AFP 2/1669","G","No", "Sunbeam","AFP 2/1697","A","No", "Cannock","AFP 2/1700","A","No", "Kestrel","AFP 2/1705","A","No", "Sequel","AFP 2/1717","G","No", "Outlook","AFP 2/1726","A","No", "Mead","AFP 2/1728","A","No", "Rakaia","AFP 2/1741","G","No", "Pelican","AFP 2/1745","G","No", "Catalina","AFP 2/1746","G","No", "Cocktail","AFP 2/1769","G","No", "Brazil","AFP 2/1780","G","No", "Camion","AFP 2/1825","A","No", "Mandolin","AFP 2/1841","G","No", "Carafe","AFP 2/1862","G","No", "Toby","AFP 2/1864","G","No", "Doyen","AFP 2/1865","G","No", "Drum","AFP 2/1867","G","No", "Rebecca","AFP 2/1871","G","No", "Saffron","AFP 2/1880","A","No", "Amarena","AFP 2/1886","A","No", "Faraday","AFP 2/1892","A","No", "Balasun","AFP 2/1902","A","No", "Thalia","AFP 2/1919","A","No", "Concept","AFP 2/1923","A","No", "Westminster","AFP 2/1939","G","No", "Oxford","AFP 2/1940","G","No", "SW Macsena","AFP 2/1951","G","No", "Waggon","AFP 2/1963","G","No", "NFC Tipple","AFP 2/1966","G","No", "Timori","AFP 2/1974","G","No", "Colibri","AFP 2/2003","G","No", "Corsica","AFP 2/2025","G","No", "Rummy","AFP 2/2034","G","No", "Silicon","AFP 2/2040","G","No", "Tuscon","AFP 2/2050","G","No", "Centurion","AFP 2/2054","G","No", "Paramount","AFP 2/2055","G","No", "Accent","AFP 2/2073","A","No", "Pelican","AFP 2/2077","A","No", "Acrobat","AFP 2/2102","G","No", "Calico","AFP 2/2104","G","No", "Quench","AFP 2/2121","G","No", "Azalea","AFP 2/2180","G","No", "Tamise","AFP 2/2188","G","No",