"assay_name","narrative","polymorphism","refs","assay_id","chromosome","cm_position","map", "HvFT3_FC816A","

The HvFT3 gene has been shown by genome-wide association analysis to be associated with the trait, 'Plant: Growth Habit'. HvFT3 is the cadidate gene underlying the short-day photoperiod response locus, PPD-H2, with deletion of the HvFT3 gene associatied with delayed flowering under short-day photoperiods.

Note: this marker is a pseudo-SNP, assaying for the presence/absence of a region of the gene. Thus, a call of SNP C indicates the gene fragment is present. A call of 'missing' (called as a '?' in the image file) means the gene fragment is absent. Note: this assay is based on GenBank accession DQ411319

SNP C = present, associated with erect/semierect/intermediate (UPOV trait scores 1-5). SNP C = absent, associated with intermediate/semiprostrate/prostrate (UPOV trait scores 6-9). 

Note: in the genotype data shown below, D = Deleted (ie a call of '?').

Note: when no DNA is present in a well, a call of '?' will also be made. Thus, final genotype call for a given accession using this assay should be based on more than 1 repetition of the assay.

","AAATGAAATGAAGAA[C/A]TTTGAGACAAGGCCA","

PMID: 21115826; 17339225

","9720099","1H","110.00","AGOUEB ver1", "accession_name","other_ref","genotype_call","genotype_ref_sample", "Maris_Otter","AFP 2/232","D","No", "Golden_Promise","AFP 2/235","C","No", "Triumph","AFP 2/278","C","No", "Golf","AFP 2/421","C","No", "Klaxon","AFP 2/456","C","No", "Halycon","AFP 2/514","D","No", "Pipkin","AFP 2/578","D","No", "Dandy","AFP 2/674","C","No", "Blenheim","AFP 2/688","C","No", "Tyne","AFP 2/750","C","No", "Puffin","AFP 2/806","D","No", "Pastoral","AFP 2/816","D","No", "Posaune","AFP 2/820","D","No", "Gypsy","AFP 2/884","D","No", "Clarine","AFP 2/899","D","No", "Alexis","AFP 2/904","C","No", "Fighter","AFP 2/947","D","No", "Manitou","AFP 2/951","D","No", "Sprite","AFP 2/954","D","No", "Bronze","AFP 2/994","D","No", "Blanche","AFP 2/1002","D","No", "Derkado","AFP 2/1011","C","No", "Dallas","AFP 2/1022","C","No", "Graphic","AFP 2/1029","C","No", "Chariot","AFP 2/1031","C","No", "Willow","AFP 2/1055","D","No", "Swift","AFP 2/1058","D","No", "Intro","AFP 2/1071","D","No", "Felicie","AFP 2/1091","C","No", "Linnet","AFP 2/1127","D","No", "Delibes","AFP 2/1133","C","No", "Cooper","AFP 2/1146","C","No", "Brewster","AFP 2/1147","C","No", "Melanie","AFP 2/1160","D","No", "Sunrise","AFP 2/1162","D","No", "Rhythm","AFP 2/1169","D","No", "Tempo","AFP 2/1170","C","No", "Fanfare","AFP 2/1171","D","No", "Vivaldi","AFP 2/1173","D","No", "Emeraude","AFP 2/1183","D","No", "Hanna","AFP 2/1184","D","No", "Cork","AFP 2/1187","C","No", "Optic","AFP 2/1188","C","No", "Brahms","AFP 2/1191","C","No", "Canasta","AFP 2/1194","C","No", "Reggae","AFP 2/1196","C","No", "Riviera","AFP 2/1203","C","No", "Tokyo","AFP 2/1210","D","No", "Arctic","AFP 2/1211","D","No", "Muscat","AFP 2/1214","D","No", "Mystique","AFP 2/1219","D","No", "Prelude","AFP 2/1221","D","No", "Crown","AFP 2/1230","D","No", "Tankard","AFP 2/1238","C","No", "Wren","AFP 2/1242","C","No", "Ragtime","AFP 2/1244","C","No", "Clarity","AFP 2/1246","C","No", "Trinidad","AFP 2/1256","C","No", "Volley","AFP 2/1262","D","No", "Rifle","AFP 2/1263","D","No", "Cobalt","AFP 2/1264","D","No", "Tiffany","AFP 2/1266","D","No", "Antigua","AFP 2/1276","D","No", "Emilia","AFP 2/1281","D","No", "Spice","AFP 2/1285","D","No", "Quartet","AFP 2/1291","C","No", "Landlord","AFP 2/1293","C","No", "Rainbow","AFP 2/1301","C","No", "Charm","AFP 2/1303","C","No", "Torup","AFP 2/1311","D","No", "Pearl","AFP 2/1318","D","No", "Jewel","AFP 2/1320","D","No", "Baton","AFP 2/1326","D","No", "Spirit","AFP 2/1334","D","No", "Candy","AFP 2/1345","D","No", "Ricarda","AFP 2/1350","C","No", "Bistro","AFP 2/1392","D","No", "Angela","AFP 2/1397","D","No", "Heligan","AFP 2/1402","D","No", "Tabetha","AFP 2/1404","D","No", "Acorn","AFP 2/1409","C","No", "Century","AFP 2/1410","C","No", "Decanter","AFP 2/1411","C","No", "Linden","AFP 2/1415","C","No", "Acapella","AFP 2/1419","C","No", "Horizon","AFP 2/1423","C","No", "Static","AFP 2/1427","C","No", "Pongo","AFP 2/1431","C","No", "Opal","AFP 2/1435","D","No", "Wizard","AFP 2/1442","D","No", "Steeple","AFP 2/1443","D","No", "Arrow","AFP 2/1445","D","No", "Rounder","AFP 2/1457","D","No", "Siberia","AFP 2/1463","D","No", "Halifax","AFP 2/1466","D","No", "Artist","AFP 2/1468","D","No", "Leonie","AFP 2/1471","D","No", "Berwick","AFP 2/1474","C","No", "Otira","AFP 2/1485","C","No", "Potter","AFP 2/1492","C","No", "Saloon","AFP 2/1501","C","No", "Anvil","AFP 2/1511","D","No", "Haka","AFP 2/1528","D","No", "Sarah","AFP 2/1534","D","No", "Carola","AFP 2/1535","D","No", "Violet","AFP 2/1540","D","No", "Akita","AFP 2/1555","C","No", "Prestige","AFP 2/1566","C","No", "Prot","AFP 2/1567","C","No", "County","AFP 2/1572","C","No", "Pewter","AFP 2/1575","C","No", "Brise","AFP 2/1576","C","No", "Viskosa","AFP 2/1579","C","No", "Neruda","AFP 2/1580","C","No", "Agenda","AFP 2/1589","C","No", "Azure","AFP 2/1591","C","No", "Alabama","AFP 2/1597","C","No", "Pippa","AFP 2/1599","D","No", "Diamond","AFP 2/1604","D","No", "Carat","AFP 2/1606","D","No", "Tucker","AFP 2/1608","D","No", "Pict","AFP 2/1626","D","No", "Scylla","AFP 2/1628","D","No", "Spire","AFP 2/1668","C","No", "Spike","AFP 2/1669","C","No", "Sunbeam","AFP 2/1697","D","No", "Cannock","AFP 2/1700","D","No", "Kestrel","AFP 2/1705","D","No", "Sequel","AFP 2/1717","D","No", "Outlook","AFP 2/1726","D","No", "Mead","AFP 2/1728","D","No", "Rakaia","AFP 2/1741","C","No", "Pelican","AFP 2/1745","C","No", "Catalina","AFP 2/1746","C","No", "Cocktail","AFP 2/1769","C","No", "Brazil","AFP 2/1780","C","No", "Camion","AFP 2/1825","D","No", "Mandolin","AFP 2/1841","C","No", "Carafe","AFP 2/1862","C","No", "Toby","AFP 2/1864","C","No", "Doyen","AFP 2/1865","C","No", "Drum","AFP 2/1867","C","No", "Rebecca","AFP 2/1871","D","No", "Saffron","AFP 2/1880","D","No", "Amarena","AFP 2/1886","D","No", "Faraday","AFP 2/1892","D","No", "Balasun","AFP 2/1902","D","No", "Thalia","AFP 2/1919","D","No", "Concept","AFP 2/1923","D","No", "Westminster","AFP 2/1939","C","No", "Oxford","AFP 2/1940","C","No", "SW Macsena","AFP 2/1951","C","No", "Waggon","AFP 2/1963","C","No", "NFC Tipple","AFP 2/1966","C","No", "Timori","AFP 2/1974","C","No", "Colibri","AFP 2/2003","D","No", "Corsica","AFP 2/2025","C","No", "Rummy","AFP 2/2034","C","No", "Silicon","AFP 2/2040","C","No", "Tuscon","AFP 2/2050","C","No", "Centurion","AFP 2/2054","C","No", "Paramount","AFP 2/2055","C","No", "Accent","AFP 2/2073","D","No", "Pelican","AFP 2/2077","D","No", "Acrobat","AFP 2/2102","C","No", "Calico","AFP 2/2104","C","No", "Quench","AFP 2/2121","C","No", "Azalea","AFP 2/2180","C","No", "Tamise","AFP 2/2188","C","No",